I'm running lassosum by following the steps on their github page. I'm at the following step: ```r v <- validate(out, pheno=pheno) # Alternatively, specify the …

Hello, I'm getting the following error message when running mageck test in --paired mode "An error occurs while trying to compute p values. Quit.." Up …

Hello, I am trying to run Busco V 4 with augustus 3.2.3, busco analysis fails with ERROR: Augustus did not recognize any genes matching the …

I have been trying to run the program NGSadmix (http://www.popgen.dk/software/index.php/NgsAdmix) using nine whole genome sequences. The program will run, however, the output in my .fopt.gz …

Hi, I'm running the following: java -jar /home/madzays/bin/trimmomatic.jar PE -phred33 /home/madzays/data/finch_data/firstrun/test/RSFV1M_S47_L006_R1_001.fastq /home/madzays/data/finch_data/firstrun/test/RSFV1M_S47_L006_R2_001.fastq ./RSFV1M_S47_L006_R1_001_paired.fastq ./RSFV1M_S47_L006_R1_001_unpaired.fastq ./RSFV1M_S47_L006_R2_001_paired.fastq ./RSFV1M_S47_L006_R2_001_unpaired.fastq SLIDINGWINDOW:4:25 MINLEN:36 the programs seems to run: TrimmomaticPE: Started …

I've been running motif analysis on my ATAC dataset using Homer's findMotifsGenome.pl command. I pretty much have just been following the basic command outlined on …

Using smrtanalysis_2.3.0.140936 CLI I'm running into errors when following the example.t for smrtpipe_basemods. For some other users, this type of error message meant wrong file …

Hi, I have human whole genome sequencing data and I want to analyze copy-number variations. So, I made subset which consists of chromosome20 ,and tested …

Hello. I'm working on genome-wide SNPs data (up to 7000), in one population per species. I have converted a table of samples into Genpop format …

I'm trying to run ps_scan.pl locally (downloaded from the ScanProsite website) but I can't get the script to run. I'm typing the command: perl ps_scan.pl …