Hi! I am trying to make the Trinotate boilerplate and apparently I'm missing cmpress.
data/programs/Trinotate-Trinotate-v4.0.1/Trinotate --create --db
myTrinotate.sqlite --trinotate_data_dir
/data/programs/Trinotate-Trinotate-v4.0.1/util/databases
--use_diamond
which: no cmpress in path
-error, cannot locate required utility: cmpress, be sure it is installed and available via your PATH env var setting which: no cmpress in path
First I tried conda install cmpress. The solver failed and couldn't find the package on anaconda.
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- cmpress
Biostars' search only popped up one mention about cmpress which wasn't any help.
I tried searching for it on google but all the results show issues about file compressing and not the package cmpress.
Does anyone know where I can find the source code or does anyone know what program it's supposed to be part of?
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fishingline37 •
cmpress can be found in Infernal package. Several types of installation are described.
Great, thanks for the help!
I didn't realize that is what Infernal was for, I wonder why it's listed as optional on the wiki if it's needed to make the boilerplate.
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you can get it here