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Solving environment: failed with initial frozen solve. Retrying with flexible solve. PackagesNotFoundError: The following packages are not available from current channels:

I am trying to install samtools on my environment bioconda with this command:

bioconda install samtool

I get this error:

Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:

How can I solve this problem because I want to convert the sam file to bam file, resulting from Hisat2 output aligner

Thanks

samtools conda bioconda
• 2,396 views • link
written by Ahmed • Ahmed

Use proper tags - in your previous post, you pasted the question text in the tag field and here, your tag is nothing. Use relevant tags (conda would be a relevant tag here). Use the site properly.

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written by Ram Ram

1 answer

  1. bioconda is a conda channel, not a command. I'm surprised it executes some sort of binary - what is the output of alias bioconda and which -a bioconda?
  2. samtool is not anything, samtools is the software you're looking for
  3. You've not pasted your complete error message, please do that.
• 0 views • link
written by Ram Ram

Thanks for telling me that, and i apologize for bad explanation because I am beginner user with the site!

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written by Ahmed • Ahmed

thanks, bro I get the solve of my problem by installing new environment and reinstalling samtools software again.

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written by Ahmed • Ahmed

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