My nextflow workflow uses a for loop in the scrip to run the same process for chromosomes 1 through n. Is there a more efficient/nextflow-like way to run this process which would also allow the output to be organized in directories by chromosome rather than id name?

process my_process {

    // But want output to somehow be in folder by chromosome rather than id?
publishDir "${outdir}/$id 

    input:
    tuple val(...), path(id)

    output:
    tuple val(id), path("${id}.chr{1,2,3,...n}.g.vcf"), 
    path("${id}.chr{1,2,3,...n}.g.vcf.idx")  

    script:
    """        
    for i in 1 2 3 ...n 
        do
            gatk --java-options -I ...
        done
    """ 
}

workflow {
    Channel
        .fromPath(params.input, checkIfExists: true)
        .map {tuple( it.name.split('.sorted')[0], it )}
        .set{input_ch}

    my_process(input_ch) 

}