Unique Variants for a sample
I have multiple .vcf files for different samples/ IDs. I need the unique set of variants or entries for a particular sample alone excluding the variants existing in all other samples. So could bcftools/ any other tools help with that? Which are the fields in VCF that I would need to consider to achieve this?
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you want
bcftool isecI used that, but only giving few fields in output. How to get all fields as in the original .vcf?
Can you help more elaborately on further commands to filter/query using isec based on allele uniquenes as I'm getting large no. of samples after isec --complement? @Pierre Lindenbaum