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What is the command line to map XLOC_ids from cufflinks with rice LOC_ids from msu

Hello Researchers

What is the command line to map XLOC_ids from cufflinks with rice LOC_ids from msu rgap 7

means i want a resultant excel sheet with XLOC_ids having similar loc_ids

input i have list of XLOC_ids and LOC_ids seperately

Thank you for the intellectual help

mapping
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written by isha.lily20 • isha.lily20

1 answer

The XLOC to LOC_id map will be generated in the .diff file of cufflink output. So you could just use cut to grab the information you want.

• 0 views • link
written by IrisChang • IrisChang

Hello Iris

I cant take from cuffdiff, i have to use only cuffmerge data because not working on differential expression

I have genome.fa of rice reference genome

and have to map with tcons of cuffmerge data is question

Thank you so much for any intellectual/ technical help

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written by isha.lily20 • isha.lily20

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