Hi,

From what I understand, for smart-seq2 sequencing files there are multiple fastq files per sample with one single/pair per cell. However, in NCBI GEO I noticed usually there are only a single pair of fastq files per sample like this one https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=run_browser&acc=SRR6155048&display=data-access and this one https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=run_browser&acc=SRR11548680&display=data-access. Is there a way of converting these files into multiple fastq files with one/pair per cell (after or during prefetch and fastq-dump)?

Thanks and good day.