so how can i add read groups?
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Error while running GATK4 Mutect2 in Galaxy
I have one clown and one control sample of python molurus bivittatus. After alignment, I am trying to use GATK4 Mutect2 to joint variant calling:
But after executing I got this error:
A USER ERROR has occurred: Bad input: The given bam input has no sample names.
How can I solve it?
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Pierre Lindenbaum
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bam is missing read groups: https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
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