Error in change Affymetrix transcript cluster id to Gene Symbol in microarray
annotLookup <- select(hugene20sttranscriptcluster.db, keys = "TC1000011370.hg.1" , keytype = "ENTREZID",
columns = c( "ENSEMBL", "SYMBOL", "ENTREZID"))
Error in .testForValidKeys(x, keys, keytype, fks) :
None of the keys entered are valid keys for 'ENTREZID'. Please use the keys method to see a listing of valid arguments
what can i do for change Affymetrix transcript cluster id to Gene Symbol? Affymetrix transcript cluster id like "TC1000011370.hg.1"
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Looks like these ID's are from Clariom arrays, which are now part of Thermo Fisher.
GEO platform annotation may have the info you are looking for: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL23126
This file from Broad institute seems to have the annotations.