AnnotationDbi using UCSC annotation
Below is the error I get, any suggestions would be helpful
res$symbol <- mapIds(TxDb.Hsapiens.UCSC.hg38.knownGene, keys=row.names(res), column="CDSNAME", keytype="TXID", multiVals="first")
Error in .testForValidKeys(x, keys, keytype, fks) : None of the keys entered are valid keys for 'TXID'. Please use the keys method to see a listing of valid arguments.
• 2,141 views
•
link
written
by
jadepinket •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Error in change Affymetrix transcript cluster id to Gene Symbol in microarray
written by ali.kian.saei •
-
None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys method to see a listing …
written by imran •
-
Cannot annotate bacterial gene IDs via R (None of the keys entered are valid keys for 'ENSEMBL')
written by Mir-Mammad •
-
What should I do with the following error? None of the keys entered are valid keys for 'ENSEMBL'.
written by abradford •
-
Problem for converting gene symbol to entrez id
written by bookorg •
-
Error while adding gene names
written by Kumar
-
AnnotationDbi using UCSC annotation
written by jadepinket •
-
R org.Hs.eg.db matching ensembl gene ids with gene symbol
written by User6891
-
Annotate ouput file from Deseq2
written by BM
-
Problem with extracting information from txdb object!
written by Parham
