Post about extracting information from GFF
1 answer
Anything related to GTF/GFF try looking at AGAT toolkit: https://agat.readthedocs.io/en/latest/?badge=latest
Log in to answer this question.
More posts like this
-
High downstream gene expression
written by yoser4 •
-
How to determine the receptor and binding site of a protein transcribed from a gene
written by yoser4 •
-
How to draw evolutionary tree with tpm data
written by yoser4 •
-
Problem after filtering vcf files
written by yoser4 •
-
How to populate snp vcf file
written by yoser4 •
-
An error occurred in bcftools view - S
written by yoser4 •
-
How to calculate how many identical elements are in each line of a file
written by yoser4 •
-
How to parse the output file of snpEFF
written by yoser4 •
-
How to convert gff file to a csv file
written by vinaysbharadhwaj •
-
Comparing top SNPs in GWAS
written by Varun •
This is what my current GFF file looks like
What is
clean comments?I updated the format I want below. Do you have any ideas?
This is what I want. The key point is that the annotation information in the last column is more "concise"
You can list the attributes from the last column and remove what you don't need with AGAT. ID and Parent are mandatory and has to be kept.