Snakemake error to build synteny from BUSCO .tsv

Hi,

I am trying to run (on CAMP) protocol 2 (https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpz1.323) of BUSCO with test data, but I am getting this error:

[diego@login001 plot_syntenies]$ snakemake -core 2 --use-conda --jobs 1
Building DAG of jobs...
MissingRuleException:
No rule to produce 2 (if you use input functions make sure that they don't raise unexpected exceptions).

Has anyone faced this problem??

synteny buso

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updated 3.4 years ago by raphael.B •

• written 3.4 years ago by Diego •

1 answer

I don't know BUSCO, but the correct command for snakemake would be this snakemake --cores 2 --use-conda --jobs 1

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written 3.4 years ago by raphael.B •

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