Knownsite vcf file not available.
For my model organism (fungi) I do not have knownsite vcf file. What should I do in recalibration step?I am using GATK. Thanks.
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Pretty sure
Fungiis a kingdom rather than an organism. If you provide full name for your organism of interest, someone may know where to find a relevant file.The name of the organism is Microbotryum intermedium.