N50 value is equal to the single contig?
I have some assemblies of ONT reads with Flye and/or Unicycler where after Quast N50 seems to be same as the length of the single circular contig of the bacteria I recover? Is that normal?
• 1,157 views
•
link
1 answer
N50 is a measure of how contiguous your assembly is, as in the past, without long read sequencing, assembly commonly resulted in incomplete chromosomes and separate contigs.
So in a perfect assembly for a single chromosome you would indeed expect that N50 == chromosome length.
See this blog post series for further reading about how N50 is calculated.
• 0 views
•
link
Log in to answer this question.