UniProt id to MSA

I have UniProt ids of 4000 prokaryotic proteins. I have to do multiple sequence alignments of those proteins. Would anyone suggest to me how to do that?

msa

• 950 views • link

updated 3.5 years ago by GenoMax

• written 3.5 years ago by Shweta •

Download the proteins from UniProt (https://www.uniprot.org/help/retrieve_sets ) and then do the MSA. Do you think using 4000 proteins for a single MSA makes sense?

• 0 views • link

written 3.5 years ago by GenoMax

0 answers

No answers yet.

More posts like this

Getting the nucleotide sequence of proteins, having their UniProt IDs
written 2.3 years ago by Mariana •

Hello! I have a database of proteins, where I have various information for each protein, including its UniProt ids, protein sequence, and more. I'll be …
Uniprot id to GO mapping
written 3.4 years ago by Shweta •

Can anyone help in GO mapping? I have a set of uniprots IDs of bacterial and viral genes. I have to GO mapping Please help …
Uniprot id to GO terms
written 3.5 years ago by Shweta •

I have Uniprot Ids of 5000 prokaryotic proteins. Would anyone suggest how to do gene ontology for those proteins as they belong to different taxa?
Clinvar mapping
written 3.5 years ago by Shweta •

Can anyone explain to me how can I map my proteins with UniProt id to ClinVar data?
Conversion of Kegg id to uniprot id
written 3.8 years ago by Shweta •

Can anyone help me how to convert Kegg ids to UniProt ids? I used UniProtKB but it didn't show the result. I really appreciate any …
How to detect novel proteins and non-annotated proteins from a list of MS proteins?
written 6.6 years ago by Farah

Hello, I have a list of 2000 proteins from an MS experiment. All of these proteins have accession IDs (Uniprot IDs). I would like to …
How to match proteins to a genome
written 7.5 years ago by l.souza

I would like to map the identified proteins obtained by a LC-MS/MS experiment to an existing genome sequence deposited at PATRIC database. I have a …
Blast for ortholog (Homo Sapiens) protein sequences for multiple query
written 8.6 years ago by kateB •

Dear All, I run the protein analysis in Unreviewed database for Canine familiaris. In result I received a lot of uncharacterized proteins (around 100). Right …
Can we draw phylogenetic tree using a set of Kegg Orthology Terms ?
written 10.7 years ago by Amk

<p>Dear All,<br /> <br /> I have done pathway annotation report with Kegg Orthology IDs for my species of interest. Can I draw a phylogeny …
Same Protein Sequence
written 11.6 years ago by Farhad •

I'm a beginner in bioinformatics, sorry for asking this question! When I have two different Uniprot-IDs for two proteins with exactly same sequence, how should …