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Question: How to match proteins to a genome
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I would like to map the identified proteins obtained by a LC-MS/MS experiment to an existing genome sequence deposited at PATRIC database. I have a list with the proteins accession (Uniprot).

Does anyone have a suggestion on how to do it?

Best regards,

Lucas

ADD COMMENTlink 11 months ago l.souza • 70
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  1. create a database of proteins (using blast, diamond, rapsearch2 etc)
  2. Search contigs/nucleotide sequences against database of proteins.
ADD REPLYlink 11 months ago
cpad0112
11k

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