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Can anyone help me install ambertool for Mac M1 silicon?

I tried using https://anaconda.org/conda-forge/ambertools and I'm unable to install using the command line. Also unable to do so using the manual install.

amber ambertools protein-ligand cpptraj
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updated by Ram Ram • written by Ankur • Ankur

My car does not start, I am unable to repair. Could you debug my repair attempts with this description that lacks any details? Say what the problem is including code and errors.

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written by ATpoint ATpoint

Hi, thank you for your reply. I'm not from programming background and trying to self learn bioinformatics, so I don't know the exact problem. I will try to be more descriptive this time. When I use conda install -c conda-forge ambertools, it gives me error for package. Which I see is because it is only for macos 64 not for macos arm64(apple silicon)

Error: PackagesNotFoundError: The following packages are not available from current channels:
 - ambertools

After searching on websites I couldn't find much. So I tried using the manual method mentioned on the website I get to and error after cmake which looks like this

Your installed version is: 0

Note that strict channel priority may have removed packages required for satisfiability.

CMake Error at cmake/UseMiniconda.cmake:160 (message):
  Installation of packages failed! Please fix what's wrong, or disable
  Miniconda.
Call Stack (most recent call first):
  cmake/PythonInterpreterConfig.cmake:63 (download_and_use_miniconda)
  CMakeLists.txt:121 (include)


-- Configuring incomplete, errors occurred!
See also "/Users/ankur/amber22_src/build/CMakeFiles/CMakeOutput.log".

and make install gives me

make: *** No rule to make target `install'.  Stop.

I need to know what can I follow to install ambertools in mac m1 as on one has asked for apple silicon before that I can refer to.

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updated by Ram Ram • written by Ankur • Ankur

1 answer

Take a look at this. You should be able to run the intel version through Rosetta (translates non Apple silicon instructions)

https://docs.openforcefield.org/projects/toolkit/en/stable/installation.html#installation-m1

As others have said, in the future try to outline what steps you've already taken and paste here whatever output you get from what you're trying to do, otherwise we have to sort of guess what you've tried and we might give you something irrelevant or something you already know doesn't work and have a long back and forth.

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written by Nico • Nico

Thank you it worked.

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written by Ankur • Ankur

If an answer was helpful, upvote it; if the answer resolved your question, mark it as accepted. You can accept more than one answer if they work. This will help future users that might find this post find the right answer.

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written by Ram Ram

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