linking methylation/SNPs to gene expression
Could anyone please help or suggest a R package for linking CpG array methylation/ SNPs to gene expression/transcriptome data in human population.
Many thanks,
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Papyrus
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Bioinfonext
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Bioinfonext
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If you have paired DNAm and expression data, take a look at ELMER, to identify pairs of correlated CpG-genes.