filtering.context.removal in RnBeads
Hi,
If I am interested only in CpG methylation then should I set to context removal as shown below; Could you please help me if it is correct or not.
filtering.context.removal = c("CC","CC", "CAG", "CAH", "CTG", "CTH" and "Other")
Many thanks, nabiyogesh
• 827 views
•
link
written
by
Bioinfonext
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Bismark Methylation calling
written by Keem Uarren Eiryll •
-
DMRcate design
written by Bioinfonext
-
linking methylation/SNPs to gene expression
written by Bioinfonext
-
Understanding Bismark and methylkit output
written by pooja_shah •
-
how to filter microbial genome based on quality score
written by Bioinfonext
-
PCoA plot with phyla abundance
written by Bioinfonext
-
Cleaning the expression matrix for the purpose of deconvolution of RNA-Seq data
written by jane.merlevede •
-
Bismark Methyl-Seq Analysis
written by Seq225
-
Conversion effinciency issue in whole genome bisulfite sequencing data.
written by Tori
-
How Much Is Too Much For 5 Prime End Methylation Rate In Rrbs Data ?
written by samsara
