This is a test version of Biostars. For the public version, visit https://www.biostars.org.
samtools missin

Hello,

I just had a fresh galaxy installation. however, the correct barcodes tool from 'dunovo' package seems to have an issue with samtools being missing. I just don't understand why samtools are not already part of the tool dependencies, hence galaxy would install them automatically once I install the dunovo package as an admin.

I tried to install samtools in _galaxy_ environment, the installation finished but problem remained unsolved. I also tried to install samtools while .venv is activated, but conda takes forever here.

(.venv) (base) k342979@mach2:~> conda install -c "bioconda/label/cf201901" samtools
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): /

Can someone help?

Thanks!

enter image description here

samtools galaxy dunovo

0 answers

No answers yet.

Log in to answer this question.