Hello, I am working on some metagenomics project using ONT sequencing.

I started working with WIMP workflow but the database is very limited and there is no much fungy ref-genomes, so I had so many unclassified reads.

Are there any alternatives to work with?

Input: fastq files containing reads from different species

Output: identification of species concerned with those reads.

Thanks in advance. Have a good day ✌️