Using MGnify API

Hi,I want to separate metagenomic sequences according to biome type from MGnify database. To this end, I will use MGnify API. How can I do this?

api metagenomic

• 677 views • link

updated 3.5 years ago by GenoMax

• written 3.5 years ago by aaggencc •

0 answers

No answers yet.

More posts like this

Mgnify download
written 2.6 years ago by bala •

Hi I want to download and merge two or more study results (like LSU, Eggnog, kegg) from mgnify and I want to merge them to …
Retrieve protein sequence from Mgnify given only accession code
written 4.1 years ago by jscience •

I only have the accession codes of several proteins from the MGnify database. I would like to retrieve the full amino acid sequence data from …
Specific metagenomic databases
written 4.2 years ago by aaggencc •

Hi, I am a new researcher in the field of metagenomics. In terms of databases, I know MGnify which include all the metagenome type such …
functional annotation of metagenomic contigs
written 4.3 years ago by serene.s •

Hi Everyone! I want to know the various tools and software that can be used to do the functional annotation of the assembled metagenomic contigs. …
MGEs analysis in metagenomic data by ACLAME data base
written 4.9 years ago by adnan.sabar7865 •

Hello everyone. I want to analyze MGEs from metagenomic data and i already trimmed adaptors sequences by scythe and trimmomatic and got my clipped fasta …
Question: Biom files in picrust1 vs picrust2
written 5.8 years ago by Claire •

Hello , Can the biome file used in picrust2 be the same in picrust1 ?? I did picrust2 can i use the same biome file …
How to change the size of the nodes in Cytoscape according to their relative abundance in co-occurr…
written 6.0 years ago by dpc

Hi there!!! I am working with metagenomic sequence data. I have generated a species co-occurrence network from the species relative abundance data in Cytoscape. But …
Resfams Database usage
written 10.2 years ago by ginna •

I want to annotate my bacterial genomes and metagenomic samples from gut microflora using the Resfams database available from the Dantas lab website http://www.dantaslab.org/resfams but …
Extending ends of sequences with the help of reads?
written 11.1 years ago by manekineko

<p>Hi,</p> <p>I have some hundreds of sequences and library of reads, How is possible to extend these sequences with the reads from the both end …
News: Upcoming Workshop: Ensembl Perl APIs
written 11.8 years ago by Denise CS

**What**: Ensembl Perl APIs: Exploring Ensembl programmatically **When**: 02-05 December 2014 **Where**: Bioinformatics Training Room, [Craik-Marshall Building](https://www.google.co.uk/maps?hl=en-GB&q=Craik-Marshall+Building,+Downing+Site,+Cambridge&source=calendar), Cambridge University At the end of this workshop, …