Code for cuffdiff, NIOSeq, bayseq to perform DEG analysis
1 answer
- NOISeq https://www.bioconductor.org/packages/release/bioc/vignettes/NOISeq/inst/doc/NOISeq.pdf
- Cuffdiff http://cole-trapnell-lab.github.io/cufflinks/manual/
- Bayeseq https://bioconductor.org/packages/release/bioc/vignettes/baySeq/inst/doc/baySeq.pdf
Read through the above user documentation and give things a try. You are not likely to get much help here if you don't ask more specific questions Tutorial:How To Ask Good Questions On Technical And Scientific Forums
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