Convert NMDS object in vegan to a tibble object
Hello!
I ran an NMDS in a dataset with 13 rows and 2630148 columns using vegan. Now I am trying to save the scores of the NMDS to a tibble table. I am running the following command:
scores(nmds) %>%
as_tibble(rownames = "samples")
And I am obtaining the following error:
Error:
! Tibble columns must have compatible sizes.
• Size 13: Column sites.
• Size 2630148: Column species.
ℹ Only values of size one are recycled.
Run rlang::last_error() to see where the error occurred.
Do you know how can I fix it? Because of the structure of my data the "sites" and "species" have to be different.
Thank you!
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what exactly do you expect as the structure of your resulting tibble? According to your error message
scores(nmds)returns a list of two separate vectors which seemingly do not correspond to each other, i.e. you do not have enough data points for a 13x2630148 data frame. How do thesitesvalues relate tospecies?