Anyone can suggest tools for detection isoform in long-read sequencing

Hi, I have the fastq and bam file from the nanopore and then I want to detect the isoform but I don,t know any tools that can use for these. Anyone can help me

Thank you

nanopore isoform

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updated 3.2 years ago by Ram

• written 3.7 years ago by ธาดา •

1 answer

There is a load of current tools for long read isoform detection right here:

https://www.nature.com/articles/s41587-022-01565-y

isoquant
TALON
Stringtie
flair

Just Google with the name and github to pull up the code.

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written 3.6 years ago by colindaven

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