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Where to find vcf of dbsnp build 144 ?

Hi everyone,

I have zipped vcf files that I would like to annotate using hg19 bsnp144. I have bed files for each chromosome but, based on other biostar answers (How to add rsIDs to VCF?), it seems it is easier to use vcf file to annotate vcfs.

How can I create a vcf that would work with bcftools OR where can I find a vcf file for my specific build?

Thanks

vcf dbsnp snp144 annotation
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updated by Ram Ram • written by nanodano • nanodano

Why do you need v144 specifically? It's not in NCBI's FTP archive so getting it might be challenging.

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written by Ram Ram

I would like to annotate a vcf using bcftools. I'm not stuck with bcftools specifically, it just seemed like the easiest way. Do you have another recommendation on annotating a vcf by any chance?

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written by nanodano • nanodano

Use a more recent version of dbSNP. The problem is with the dbSNP version, not with bcftools.

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written by Ram Ram

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