I have created clusters using CD-HIT for miRNA NGS data. The length of miRNA is 16-40 and I would like to find out the total …

Hello all, I’ve a horrible feeling this is going to be a stupidly obvious answer but I’ve had no luck finding a similar question amongst …

Announcement from BLAST product manager at NCBI. Cross-posting here since may be of general interest. ---------- Primer-BLAST now has a “Primers common for a group …

Dear community members, We present [**SEDA**][1], an open source application for processing FASTA files containing DNA and protein sequences. The source code is available at …

I am trying to use BiBiServ-RNAHybrid but am encountering certain problems.KIndly help me asap. I wish to obtain the following results using RNAHybrid (Objectives) - …

I have set of subject sequences (25 to 40 bps long). My query sequences are 200-300 bp long. I am trying to find the location …

I'm looking for a library that performs local alignment with the next features: 1- Returns the start and end position of query and subject 2- …

Hi, I am relatively new user of BLAST. I am trying to use a different window size than the default 40 for comparison with another …

<p>Hi everybody,</p> <p>The E-value cutoff in the miRBase is 10 by default. In my opinion,it seems a bit high for miRNA (short sequence) since the …

I copied this line out of [a paper][1]. > Firstly, all the known pre-miRNAs in the training set are used as queries to BLAST search …