More posts like this
-
Array vs WGBS: Can't I use a package designed for array data for WGBS or any other data?
written by Burak Özyürek •Hello everyone, Currently I'm a beginner in the world of methylation analysis. I am pre-processing the raw data sets and extracting methylation data via bismark. …
-
GenAlEx Haploid Data Detecting Recombination
written by turcoa1 •Hello, I am currently using GenAlEx to try and detect if recombination is present in both of my populations. My data consists of 4 Loci …
-
How to extract conserved regions from multi sequence alignment by linux terminal?
written by Ahmad •Hello everyone, I hope you are well I want to make common PCR primer for group of sequences , So I want to extract conserved …
-
Histone marks enrichment analysis
written by gspirito •Hello everyone, here's my question: I have a bed file of human genomic coordinates (hg19), and I would like to know whether ChIP-seq peaks for …
-
Best mapping tool for bacterial RNA (paired end sequence)
written by priya.saxena •Hello Everyone, I am trying to analyze rna-seq (paired-end) data generated from illumina, can anyone suggest me which tool for mapping will be best for …
-
Enrichment of genes in a custom gene set
written by ika •Hello everyone, I have a gene list of results of a new analysis and would like to test whether these are enriched in the gene …
-
haploview to cervus
written by marion.ryan •I have formatted a genotype file for haploview and have now obtained the genotypes of the parents and wish to carry out parentage testing (Sheep). …
-
Differential Expression analysis using Wald-Test
written by Duckula •Hello everyone, I am interested in using wald-test for comparing two groups in my expression data and find variable genes. I already know the test …
-
Analysis of gene expression
written by FatimaHello everyone, I have mapped a few reads to several reference genomes and have measured gene expression (expression level of a bunch of genes in …
-
QUAST alignment contig retrieval
written by bpz •Hello everyone I have used QUAST to analyze a set of contigs against a reference genome, and one of the results is an image (svg) …