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How to get Protein names and their ID for a given list of peptide sequence (using Python)

I have a list of peptide sequence, I want to find which protein belongs to it. Using any Open Database like Uniprot, i.e., peptides belonging to the proteins. can someone help how to find the protein names and ID, thanks in advance.

protein peptide uniprot

Maybe using blastp through Bio.Blast.Applications? Something like:

Ncbiblastpcommandline(query='input.fasta', db='database', outfmt=5, out='output.xml', remote=True)

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