How to make a genome assembly file with two scaffold files?
I have two scaffold files from one sample. I want to make genome assembly file with them. There is also the reference genome of the relative species in the same genus. Which program is suitable?? I could't use the RagTag. There was the error: [Errno 13] Permission denied: 'ragtag_correct.py'. I am a root user so that please let me know the program without the permission.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
de novo chromosome level assembly
written by mthm •
-
Use Hi-C Sequence Data of close relative for scaffolding of genome.
written by SomeOne •
-
haploid genome phasing using close relative
written by Amy •
-
What does "super" in reference genome mean??
written by ongchip •
-
shutil.Error while running spades --test
written by Z_YF •
-
Strange error with RagTag
written by zhousun21 •
-
Generating a dotplot following ragtag scaffolding
written by kschach2 •
-
[Errno 13] Permission denied Reading Genome Fasta
written by malj •
-
Mapping of a de novo assembled transcriptome to a genome of relative species
written by seta
-
Set Allpaths-Lg Temporary Directory
written by Fabian Bull
