What is the best way to read PLINK .raw format files into R?
1 answer
You can try data.table.
However, if you wish to work with plink file in R, you might want to use dedicated packages such as bigsnpr or the one by plink's author: https://github.com/chrchang/plink-ng/tree/master/2.0/pgenlibr (not on CRAN)
Log in to answer this question.
More posts like this
-
How to convert plink files to Hapmap Format
written by Sofia •
-
How can I convert plink (.bed, .fam and .bim) fileset to .pgen file format?
written by Mahan
-
How to convert bgen data files to PLINK format
written by bha
-
Genotype information on illumina EPIC chip using the meffil package
written by gunnhelenmoen •
-
Convert Genotype SNP Matrix Into Plink Format, allelic form
written by Kian •
-
Convert fastq to plink .bed
written by genomics Newbie •
-
Illumina SNParray reading with beadarraySNP Bioconductor package
written by obsteter.jana •
-
From Illumina Final report to PLINK input
written by lisesandenbergh •
-
Trouble reading plink (.raw) file into R (adegent)
written by sryan6 •
-
Convert Dosage Files To Bed Files
written by hubStar •
