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Best practices and programs tu run a WGS genetic analysis

I had my own whole genome sequenced through Illumina 2x150 paired reads. Coverage is around 32X

I would like to analyze this genome, and would like to ask you for some advice, best practices, recommended mapper, variant databases that I can use and anything that can help me out in this road

I am planning in using a regular mapper such as bowtie2 or BWA, generate the VCF files using bcftools, databases such as ClinVar and the like, etc

genetic wgs analysis
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written by Antonio R. Franco Antonio R. Franco

3 answers

https://github.com/nf-core/sarek

An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing

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written by Pierre Lindenbaum Pierre Lindenbaum

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