Visualization of networks inferred using GrnBoost2 on bulk mRNA expression data
I've generated a tsv file of gene regulatory network inference using the GrnBoost2 algorithm (https://arboreto.readthedocs.io/en/latest/). The file has regulatory links in a pandas dataframe format ['TF', 'target', 'importance'].
What is the appropriate software to visualize the data?
I've considered pySCENIC, but its visualization is built for single-cell data. I've also considered Cytoscape, but it does not accept my output format.
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