calling peaks in ChIP-seq datasets from bedgraph files

Hi everyone.

Continuing a previous posting (Obtain ChIPseq peaks from a bedgraph file with continuous regions), which other peak callers (beside MACS2) may call ChIP-seq peaks when it needs to start from a bedgraph file (not from a bam file) ?

Thanks a lot,

Bogdan

chip-seq macs2

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updated 3.9 years ago by Marco Pannone •

• written 3.9 years ago by Bogdan

epic2 also allows .bed/.bedgraph files as inputs. It is a peak caller particularly useful for quite broad marks.

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written 3.9 years ago by Marco Pannone •

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