Convert UCSC BAM file to Ensembl
Hi, I'm looking for a way to convert my UCSC BAM files to an Ensembl format. Is there an easy way to do it? Thanks, Elad
• 1,460 views
•
link
written
by
elad.zisman •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Convert .bam file from version 1.6 to 1.4
written by Abhi •
-
Getting genes' sequences by querying gene symbols/names
written by langziv •
-
How do I compare reads between two bam file?
written by Assa Yeroslaviz
-
Is it possible to remove reads from BAM which match the reference at a position
written by yryan •
-
Is it possible to convert back to .ped from .raw (made with plink)?
written by meri.kaustio •
-
csv into genome browser
written by H.Hasani
-
Genomic Bam To Transcriptome Bam
written by dfernan
-
.Xyz To .Pdb Conversion
written by spandankeshav •
-
Obtaining Ucsc Tables Via Ftp And Converting Them To Proper Gff3 Via Genepredtogtf?
written by user
-
Ucsc/Ensembl Bam Converter?
written by 2184687-1231-83-
how do you define an "Ensembl format" ?
I have BAM files that where aligned to hg19 which is a UCSC assembly, and I what it to be aligned to grch37 instead, an ensembl assembly.
so you "just" want to change the chromosome notation ? Bam File: Change Chromosome Notation ; Change chromosome notation in bam file ; BAM File, Change chromosome notation ; Change Notation Of Chromosome In Bam File ; ....
From what I understood the gene annotation is also different, but yes, the chromosome notation too.
Thanks for the links. I now understand what I need to do!