Chip-seq
Hello, I created the peaks with the MACS2 command but now I don't know how to transport the files to R and do genetic analysis. I would like to see which genes the peaks correspond to but (edgeR) I can't figure out how to do this and which of the various files MACS2 has created I should load. Thank you
• 509 views
•
link
written
by
michelafrancesconi8 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to run CallPeaks()
written by Chris •
-
How to get a list of gene names from macs2 peaks
written by Daniel •
-
macs2 for centromere chip-seq peak calling
written by Alex S •
-
How to quantify the reads of peaks?
written by Dan •
-
How to merge samples of the same cell type to do differential peak calling?
written by zau saa •
-
Handling replicates in Chip-seq
written by chaudharyc61 •
-
How to create heatmaps only with DE genes in edgeR
written by Björn •
-
Using MACS2 for peak calling
written by anais1396 •
-
UCSC genome viewer for non-model organism
written by anu014
-
error in macs2 usage
written by Sara
