VCF to MAF using oncotator
Does anyone know the bash code to convert a vcf to a maf in oncotator? Thanks!
• 1,273 views
•
link
updated
by
Dave Carlson
•
written
by
hamrejr •
•
written
by
hamrejr •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to keep quality annotations in MAF file using vcf2maf?
written by Gonzalo •
-
Is it possible to generate a single maf file from multiple vcf files using vcf2maf ?
written by sselvar •
-
How to convert vcf to MAF ?
written by sunnykevin97
-
Converting .maf file to .mfa file
written by sap940 •
-
Using bcftools to change ploidy level in vcf files
written by flolil27 •
-
Running Oncotator with MuTect2 output
written by haiying.kong
-
Generate GVF file from VCF file
written by win
-
Tool or Script to convert MAF file to VCF ?
written by ttom
-
Can Anyone Send Me One Copy Of Maf-Convert.Py ?
written by Cacau
-
Convert .Maf To .Xmfa Alignment?
written by anin.gregory
Do you have to use Oncotator? It's no longer updated or supported by the BROAD. It might be useful to try Funcotator instead (part of GATK). There is a very detailed tutorial here:
https://gatk.broadinstitute.org/hc/en-us/articles/360035889931-Funcotator-Information-and-Tutorial