Changing from "rs" to "chr_pos_ref_alt"
I'm attempting to change my SNP ids (in my bim file) from "rs_________" to "chr_pos_ref_alt" but am having some trouble.
Can someone provide some guidance? What awk scripts could I use?
EDIT: basically trying to switch from "rs11260745" to "1_24088128_G_A"
2 answers
plink 2.0's --set-all-var-ids flag provides one way to do this.
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chrchang523
Use bcftools annotate -I. Your requirement is the exact example given in the manual.
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