Plotting Isoform Abundance
Hello,
Does anybody know of a quick and easy way to plot isoform abundance for given genes? I've used Salmon to quantify expression across my samples.
What I'd like to do is to use that data to look at how isoform expression varies from sample to sample - not necessarily DE, just relative abundance.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
question on how differential expression is affected if there is differential abundance between cell…
written by lordoftheflower •
-
Mapping RNAseq counts to genomic loci
written by Ssri •
-
Transcriptome assembly and estimating abundance with Trinity
written by Sammy •
-
comparative gene quantification, problem with COGs and hypothetical proteins.
written by Hansen_869 •
-
Measure expression level of a single (novel) transcript in multiple fastq files
written by c_u
-
Where is the (hg19) reference data for transcript isoforms' relative abundances for each gene?
written by Joel Wallenius
-
Heatmap for RNA-Seq data
written by chetana •
-
TPM VS FPKM VS TMM and K-mer specific expression quantification
written by user230613
-
Three way comparison RNAseq libraries
written by rodrigo.nicodemos82 •
-
Comparing FPKM values from cufflinks and cuffnorm
written by bow
Please provide any example data that are easy to parse. Are you familiar with R or Python?
I'm familiar with both languages, but new to bioinoformatics.