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how can I merge or put together the different genomic dataset?

Hello to everyone!

I pulled raw data from SRA which consists of 7 different bioproject datasets. All are metagenomic data. Some are 16S rRNA sequence, some are whole genome sequence.

I analyzed all the raw data separately according to the bioproject information such as the instrument used etc.

I will then build a machine learning model using this analyzed data. But my problem is how can I merge or put together these different datasets before model building?

Can you help me on how to proceed?

Thank you Seda

merging integration dataset genome fusion
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updated by Ernest Bonat • Ernest Bonat • written by ssko • ssko

one simple solution of this problem is to using python pandas library. here are two main steps:

  1. open each file and create a dataframe with the selected columns name
  2. merge these dataframes (Merge, join, concatenate and compare)

i got all this python code already running. let me know if you need my help?

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written by Ernest Bonat • Ernest Bonat

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