This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How can we Convert .smp files to .hmm files ?

How can we Convert .smp files downloaded from "https://ftp.ncbi.nih.gov/pub/mmdb/cdd/cdd.tar.gz "to .hmm files ?

conserved domain
• 1,306 views • link
written by shruti.x.kapil • shruti.x.kapil

Can you provide an example of the .smp format? Have you tried anything using basic linux tools like cut, awk, sed, or in whatever language you know?

• 0 views • link
written by BlastedBadger BlastedBadger

Example of .smp files, top lines from the file.

Smp file top lines

I haven't tried anything using linux tools yet, not sure how to convert the file into .hmm format. Could you please help?

• 0 views • link
written by shruti.x.kapil • shruti.x.kapil

0 answers

No answers yet.

Log in to answer this question.

More posts like this