Regarding KRAKEN tool in galaxy · Biostar

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Regarding KRAKEN tool in galaxy

I have trimmed reads of the whole genome of a novel fungal species. I want to upload it in kraken in galaxy server for identification. But I am unable to find a database suitable for fungus in kraken. The only options that appear are Plasmids, Bacteria and Virus. Can someone please help with this? Thank you!

kraken galaxy fungal genome database

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written 4.1 years ago by Shakunthala Natarajan •

Don't waste your time with this. Go ahead with the genome assembly instead, and use the genome to determine if your fungal isolate is a new species or not

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written 4.1 years ago by andres.firrincieli

Fine thank you!

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written 4.1 years ago by Shakunthala Natarajan •

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