How to convert CEL file to PLINK format
Hello,
I am a PhD student and I am working with SNP data for the first time.
All I have is .CEL file and from what I understand from the manuals for PLINK i need either .map and .ped or a VCF file. I'm struggling to find information on how to achieve that. A lot of sites I did find say I need a few different files besides .CEL.
I am working with SNP data from different apple varieties (plant breeding department), adn the idea is to analyse the data with PLINK.
Any help would be deeply appreciateed.
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