Match genes with the pathway they participate

Hello, I want to find a database that match the gene with the pathways the gene participate. If you could help me i would be more than thankfull!

Thanks, Eleni

genes pathways databases

• 1,300 views • link

updated 4.1 years ago by cpad0112

• written 4.1 years ago by eleni.psar •

Reactome

• 0 views • link

written 4.1 years ago by ATpoint

Try pathway enrichment tools such as clusterprofiler. This tool would list enriched pathways given a list of genes from variety of sources.

• 0 views • link

written 4.1 years ago by cpad0112

0 answers

No answers yet.

More posts like this

Bioinformatic tools to map mutations to pathways
written 2.4 years ago by eleni.psar •

Hello everyone, I would like to ask if there is any free access bioinformatic tool that can map mutations to pathways. For the mutation, I …
Gene Set Enrichment Analysis, pathway, metabolism
written 3.5 years ago by Rob •

Hi friends, I am doing GSEA for specific pathways. I want to analyze my genes with the gene sets in specific pathways, such as the …
How to apply vcftools --diff and extract only the different variants
written 4.5 years ago by eleni.psar •

Hello, I am trying to apply vcftools --diff in order to extract the different variants between two VCF files. vcftools --vcf marked_IO002_tumor-pe.vcf --diff marked_IO002_normal-pe.vcf --diff-site …
How to compare vcf files and keep only their differencies ?
written 4.5 years ago by eleni.psar •

Hello, I am currently working on my thesis and I am trying to analyze the results of NGS sequencing Illumina. I am not really familiar …
Transcription factors database
written 4.5 years ago by Fatemeh •

Hello everyone, I am wondering if you know how I can find which transcription factor is expressing my gene of interest. I mean whether there …
Duplicated genes in overrepresentation analysis (ORA)
written 5.5 years ago by nhaus •

Hello, I have different gene lists from different biopsies. In each gene list, all genes are listed which carry a mutation (identified by WES). I …
how to insert more than 100 miRNAs in MiRpath v.3
written 7.3 years ago by Yoosef •

Hello I want to use mirpath v.3 in order to find pathways that my miRNAs has function. the problem is , the database identifies only …
How to get the pathway-protein relationship?
written 7.4 years ago by ahmedmelmoselhy •

Dears, I have a list of proteins ("Entry" values from UniProt) and I want to get a list of pathways which those proteins participate in. …
GeneSCF gives out more pathways for genes compared to DAVID
written 10.1 years ago by a.james

Hello All, I am using geneSCF on a set Differentially Expressed genes with KEGG database, and it's giving me more significantly enriched pathways than DAVID …
Pathway analysis using R
written 10.4 years ago by Ati •

I did pathway analysis using gtGO function in "globaltest" but I get too many pathways as result. I want to filter pathways which have more …