Methylation calling -Primrose Package

Question

[priya.bmg]

Hello

I used the Primrose package (https://github.com/PacificBiosciences/primrose) for methylation calling. I have some doubts on understanding the MM tags. For example, in IGV, I could see the methylation in a given site as shown in the screen shot. What are the values given in MM tag?. Is mismatch expected as shown in the CIGAR score

Thanks Priya