This is a test version of Biostars. For the public version, visit https://www.biostars.org.
error in connecting to R

Hello everyone,

I am trying to run CNV Robot pipeline. When I am running the final script after all the necessary changes, the error pops up while connecting to the Rscript. bash run.sh and the error is:

Error in file(file,"rt"): cannot open the connection

calls:%>% ->mutate ->read.delim -> read.table ->file

Please help to find the cause of the error.

Thank you.

r shell script
• 1,303 views • link
written by parinv • parinv

R tries to load a file it can't find and thus raises this error. Check that your input data and potentially references are correctly specified. Watch out for wrong case and blanks in file or folder names. If that doesn't help, also consider hyphens/dashes etc. - sometimes visually identical letters are actually not.

• 0 views • link
written by Matthias Zepper Matthias Zepper

Thank you so much. I was able to resolve this error. It seems the input file was unavailable.

• 0 views • link
written by parinv • parinv

0 answers

No answers yet.

Log in to answer this question.

More posts like this