https://www.ebi.ac.uk/metagenomics/genomes/MGYG000000001#overview
Hi Guys,
I want to get the Genome statistics parts from the webpage and I don't know how to do it by python. I would appreciate it if anyone could help me. I tried by this but the output is nothing.
import requests
from bs4 import BeautifulSoup
html = requests.get("https://www.ebi.ac.uk/metagenomics/genomes/MGYG000000001#overview")
soup = BeautifulSoup(html.text,"lxml")
# print(soup.prettify())
# print(soup.title)
# print(soup.head)
soup1 = soup.select("div.vf-grid.vf-grid__col-2")
print(soup1)
•
written
by
xzhang55 •
why scrapping when there is a REST API ?
$ wget -q -O - "https://www.ebi.ac.uk/metagenomics/api/v1/genomes?accession=MGYG000000001" | python -m json.tool
{
"data": [
{
"attributes": {
"accession": "MGYG000000001",
"completeness": 98.59,
"contamination": 0.7,
"eggnog-coverage": 93.78,
"ena-genome-accession": null,
"ena-sample-accession": "ERS370061",
"ena-study-accession": "ERP105624",
"first-created": "2021-12-07T18:06:34.762463",
"gc-content": 28.26,
"genome-id": 4888,
"geographic-origin": "Europe",
"geographic-range": [
(...)
Hi, I'm not very familiar with the API, could you please give me more details? I would like to download the "data" part as a csv file.
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