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Mouse SNPs to genes

How can I map a mouse SNP (chrom: pos) to a gene?

I have the chrom: pos for each of the SNPs I am looking at and I want to figure out the gene that it relates to, so then I can take it a step further and relate it to gene function. Is there a way I can do this with the UCSC genome browser?

genes snp mouse
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written by sonpat • sonpat

1 answer

If your list of SNPs is sizable, you should consider BioMart from ensembl instead.

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written by swbarnes2 swbarnes2

Okay great thanks! I am only going through 20-50 SNPs so not too large of a dataset.

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written by sonpat • sonpat

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