Downstream validation to differential alternative splicing analysis from RNA-seq
I am wondering what's the best approach to be applied for downstream validation to differential alternative splicing analysis from RNA-seq?
Thanks.
splicing
differential
• 1,126 views
•
link
updated
by
rpolicastro
1.3K
• |
written
by
Shicheng Guo
963
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Best RNA-seq downstream visualization workflow
written by Shicheng Guo 963What's the best RNA-seq downstream visualization workflow the best workflow in a larger context?? for example VIPER vs RASflow? https://github.com/hanfeisun/viper-rnaseq/issues/4 https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3433-x Thanks Shicheng
-
Best method of integrative analysis for GWAS and differential expression data
written by Shicheng Guo 963Hi All, What's the best method of integrative analysis for GWAS and differential expression data? Thanks.
-
alternative splicing analysis
written by ams2021 0I am trying to find a good software to do alternative splicing analysis for RNA-seq data. I was told that the STAR 2-pass mode would …
-
Are alternative splicing analysis and differential expression analysis of RNA-seq data both needed?
written by ams2021 0I am trying to design an experiment to do differential experiment analysis on two breeds of one species and compare them. I have been suggested …
-
What's the difference between DESeq and EdgeR?
written by Novogene 54I have one question about the RNA-seq analysis software and pipeline. What's the best analysis software for gene differential expression? What's the difference between DESeq …
-
Software/packages for analyzing differential isoforms from RNA-seq data?
written by Kai_Qi 13Hi All: I am trying to analyze the RNA-seq data created from antibody immunoprecipitated transcripts at nucleus and cytosol. I can use differential gene expression …
-
Multiple phenotypes based GWAS approach
written by Shicheng Guo 963Hi All, I have several related phenotypes (~20 and average R2=~0.3) in a GWAS study. I am wondering what's the best approach to perform GWAS …
-
Public data to investigate gene regulatory network
written by Shicheng Guo 963Hi All, I want to find two datasets (discovery and validation) dataset to investigate the regulation network. The ideal dataset includes Gene expression-RNA-seq, DNA methylation, …
-
Fold change > 2 and P-value<0.05 in micro-array differential analysis
written by Shicheng Guo 963Hi colleagues, I saw lots of high-through microarray or RNA-seq analysis, such as mRNA microarray, RNA-seq, use fold change > 2 and P-value <0.05 as …
-
Best Approach To Predict Novel And Alternative Splicing Events From Rna-Seq Data
written by Sahel 31<p>Hi All,</p> <p>I am looking for the best approach to predict novel and alternative splicing events from RNA-seq data. I tried to use Cufflink and …
If you are asking about bench validation, if you only have a few targets RT-qPCR would work well.