I have a trinity file in a fasta format and I want to get the gene(s) with the highest no. of isoforms.

Hi I have made an denovo transcriptome using Trinity and also the specie has the draft genome too. For next projects ., We want to …

I have used Trinity 2.8.4 to do denovo assembly of my plant RNA seq data. Now I have finished assembly, but how to know that …

Hello everyone, I am studying RNA-Seq pipelines and would like some advice on how to deal with genes isoforms. Since we deal with sequencing of …

Hi.. Please help me to understand StingTie or cufflinks based assembly, After read mapping to the genome, do they just take only correspondence reference genome …

I have done denovo transcriptome assembly and I have done annotation by doing blastx with NRDB.(I have saved result in tabular format). I have fetched …

Hi all, I would like to know how many reads used by the assemblers, like Trinity and Soap-denovo trans tools for making a de novo …

<p>Hi everybody,</p> <p>Regarding Trinity tool for transcriptome assembly, I noticed that it has high percentage of non-specific matches during mapping reads back to assembled transcriptome. …

How to use trinity to perform denovo transcriptome assembly using illumina and 454 data. Please share your comments.

<p>We have sequenced from two tissue of plants which are distantly related but are from same species. I want to compare these two transcriptome of …